10.25387/g3.12268739.v1 Joseph P. Gallagher Joseph P. Gallagher Corrinne Grover Corrinne Grover Guanjing Hu Guanjing Hu Josef J. Jareczek Josef J. Jareczek Wendel Wendel Supplemental Material for Gallagher et al., 2020 GSA Journals 2020 cotton domestication gene coexpression differential gene expression fiber polyploidy Plant Biology Genomics Evolutionary Biology 2020-06-25 14:43:05 Dataset https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Gallagher_et_al_2020/12268739 Fig S1, RNA-seq library PCA by timepoint; Fig. S2, REVIGO plots summarizing homoeologous gene coexpression network module GO term enrichment; Fig. S3, patterns of module eigengene expression for each homoeologous gene coexpression network module; Fig. S4, gene membership correspondence between the wild and domesticated gene coexpression networks; Table S1, RNA-seq library read mapping and counts summary; Table S2, GO enrichment results for differentially expressed genes; Table S3, basic statistics for the joint and homoeologous gene coexpression networks; Table S4, GO enrichment results for the homoeologous gene coexpression network modules; Table S5, basic statistics for the wild and domesticated gene coexpression networks; Table S6, GO enrichment results for the differentially coexpressed genes; Table S7, genes showing both differential expression and differential coexpression; Table S8, genes showing both differential expression and differential coexpression related to cell wall biosynthesis and the cytoskeleton.