Supplemental Material for Zhao et al., 2020
Tingting Zhao
Zhongqu Duan
Georgi Z. Genchev
Hui Lu
10.25387/g3.12206744.v1
https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Zhao_et_al_2020/12206744
<div>Supplementary Tables:</div><div>Table S1: Table showing information of 17 de novo assemblies used in this study. Table S2: Table showing information of 279 next-generation sequencing samples used in this study. Table S3: Table showing identifying euchromatic and non-euchromatic gaps. Table S4: Table showing euchromatic gaps and non-euchromatic gaps information. Table S5: Table showing all of the gap-closing sequences in 17 human de novo assemblies, four non-human primate genomes and other NRS datasets. Table S7: Table showing the gap-closing sequences closed by NA24385 with MUMmer in QUAST.</div><div>Supplementary Figures:</div><div>Figure S1: Comparision between gap-closing sequences involved in the closed gaps from minimap2 and MUMmer in the individual genome NA24385. Figure S2: Non-redundant gap-closing seuqneces covered by unmapped reads from SGDP dataset. Figure S3: Promoter regions associated with CpG islands predicetd by CpGProD in non-reference gap-closing sequneces.<br></div>
2020-06-12 16:51:44
genomic gaps
human genome
de novo assemblies
gap closure
non-reference sequences
Bioinformatics
Genomics