Supplemental Material for Mueller et al., 2020 William F. Mueller Petra Jakob Han Sun Sandra Clauder-Münster Sonja Ghidelli-Disse Diana Ordonez Markus Boesche Marcus Bantscheff Paul Collier Bettina Haase Vladimir Benes Malte Paulsen Peter Sehr Joe Lewis Gerard Drewes Lars M. Steinmetz 10.25387/g3.12014913.v1 https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Mueller_et_al_2020/12014913 Supplementary material for Mueller et al., 2020 includes additional figures and discussion described in the paper. These include datasets used to generate the conclusions in the paper (differentially expressed transcript and protein tables and the data files used to generate those analyses tables) that were unable to be submitted to a online repository. <div><br></div><div><p>File S1 – Contains the supplementary figures and discussion as referenced in the main text of Mueller et al, 2020. </p><p>File S2 – A ZIP file containing the raw data for the expression proteomics of the K562 cell lines used in the paper. </p><p>File S3 – A ZIP file containing the raw data for the TPP of the K562 cell lines used in the paper as output from the TPP R package. </p><p>Table S1 – Differentially expressed transcripts in NGLY1 KD K562 cells. </p><p>Table S2 - Differentially expressed proteins in NGLY1 KD K562 cells. </p></div> 2020-03-23 13:48:32 autophagy deglycosylation NFE2L1 NGLY1 deficiency NRF1 Molecular Biology Proteomics and Intermolecular Interactions (excl. Medical Proteomics) Gene Expression (incl. Microarray and other genome-wide approaches) Bioinformatics