10.25387/g3.11866281.v1
Yuheng Du
Yuheng
Du
Qianhui Huang
Qianhui
Huang
Cedric Arisdakessian
Cedric
Arisdakessian
Lana Garmire
Lana
Garmire
Supplemental Material for Du et al., 2020
GSA Journals
2020
Single cell RNA-Seq
single nuclei RNA-Seq
alignment
star
Kallisto
Bowtie2
10x genomics
Drop-seq
Fluidigm
accuracy
Bioinformatics Software
2020-03-27 13:11:38
Dataset
https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Du_et_al_2020/11866281
Supplemental material for Evaluation of STAR and Kallisto on single cell RNA-Seq data alignment. Include: comparison on dropout rates, comparison with FISH gini, comparison with Bowtie2, proportion of cell types, clustering result for Kallisto with only cDNA as index, alignment rate comparison, cell types comparison, and marker genes comparison<br>