10.25387/g3.11866281.v1 Yuheng Du Yuheng Du Qianhui Huang Qianhui Huang Cedric Arisdakessian Cedric Arisdakessian Lana Garmire Lana Garmire Supplemental Material for Du et al., 2020 GSA Journals 2020 Single cell RNA-Seq single nuclei RNA-Seq alignment star Kallisto Bowtie2 10x genomics Drop-seq Fluidigm accuracy Bioinformatics Software 2020-03-27 13:11:38 Dataset https://gsajournals.figshare.com/articles/dataset/Supplemental_Material_for_Du_et_al_2020/11866281 Supplemental material for Evaluation of STAR and Kallisto on single cell RNA-Seq data alignment. Include: comparison on dropout rates, comparison with FISH gini, comparison with Bowtie2, proportion of cell types, clustering result for Kallisto with only cDNA as index, alignment rate comparison, cell types comparison, and marker genes comparison<br>