Supplemental Material for Morton et al., 2020 MortonElizabeth A. HallAshley KwanElizabeth X. MokCalvin QueitschKonstantin NandakumarVivek StamatoyannopoulosJohn BrewerBonita J. WaterstonRobert QueitschChristine 2019 <p> </p><p>Supplemental methods, figures, and tables accompanying Morton <i>et al</i>. manuscript "Challenges and Approaches to Genotyping Repetitive DNA"</p> <p>File S1 contains supplemental materials and methods and a list of tables</p> <p>Figure S1 contains Southern blots and ethidium bromide staining of CHEF gels</p> <p>Figure S2 contains droplet digital PCR condition optimization</p> <p>Figure S3 contains details of smMIP-based copy number estimation</p> <p>Figure S4 contains details of rDNA locus FISH characteristics for <i>C. elegans</i> strains</p> <p>Table S1 contains metrics from Nextera whole genome sequencing of <i>C. elegans</i> strains</p> <p>Table S2 contains percent error of rDNA copy number estimation for <i>C. elegans</i> strains</p> <p>Table S3 contains results of downsampling <i>C. elegans</i> WGS data</p> <p>Table S4 contains different aligner and trimming comparisons of <i>C. elegans</i> strains rDNA copy number estimate</p> <p>Table S5 contains coordinate of <i>C. elegans</i> single copy regions</p> <p>Table S6 contains WGS counts of <i>C. elegans</i> single copy regions</p> <p>Table S7 contains published yeast strain SRA numbers</p> <p>Table S8 contains yeast diploid strain rDNA estimates</p> <p>Table S9 contains yeast strain SNV genotyping</p> <p>Table S10 contains droplet digital PCR raw data</p> <p>Table S11 contains smMIP data</p> <p>Table S12 contains rDNA FISH summary cell counts</p> <p>Table S13 contains rDNA FISH data</p> <p>Table S14 contains sequences of oligos</p> <p>Table S15 contains band measurements from <i>C. elegans</i> CHEF gels</p>