Falque, Matthieu Jebreen, Kamel Paux, Etienne Knaak, Carsten Mezmouk, Sofiane C. Martin, Olivier Supplemental Material for Falque et al., 2020 p { margin-bottom: 0.25cm; direction: ltr; line-height: 120%; text-align: left; background: transparent none repeat scroll 0% 0%; }p.western { font-family: "Liberation Serif", serif; font-size: 12pt; }p.cjk { font-family: "AR PL SungtiL GB"; font-size: 12pt; }p.ctl { font-family: "FreeSans"; }a:link { color: rgb(0, 0, 128); text-decoration: underline; }<p> List of Supplementary Material<br>Supplementary Table S1. Detailed statistics of the three populations GABI, IBM, and WHEAT<br>Supplementary Table S2. Assessment of rates of true and false positives by visual inspection<br>Supplementary Figure S1. Examples of allele frequency profiles showing characteristic signatures of four different types of 1:2 or 2:1 CNVs.<br>Supplementary Figure S2. Examples of allele frequency profiles for each type of three-locus events found in wheat.<br>Supplementary Figure S3. Examples of allele frequency profiles showing different situations where no CNV was identified by the software.<br>Supplementary File S1. CNVmap software as an R package ( CNVmap12.tar.gz archive to open in R with the function install.packages() ).<br>Supplementary File S2. Compressed (.zip) archive of GABI data sets to run CNVmap.<br>Supplementary File S3. Compressed (.zip) archive of IBM data sets to run CNVmap.<br>Supplementary File S4. Compressed (.zip) archive of WHEAT data sets to run CNVmap.<br>Supplementary File S5. Supplementary Methods: specification of all CNV signatures recognized by the software CNVmap.<br>Supplementary File S6. Installing with Rstudio. Particular procedure for some versions of R/Rstudio.<br><br> </p> Copy number variation (CNV);Segregating populations;Allele frequency profiles;Non-Mendelian markers;Genetics 2019-12-27
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10.25386/genetics.10266425.v1